PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016505845.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 708aa    MW: 79115 Da    PI: 7.4438
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016505845.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-057697223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    kC++C++ F  + n++rH+r+H
  XP_016505845.1 76 KCEKCSREFYAPINYRRHMRLH 97
                    7*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.4327597IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MSVGKLRIGA TPAAMKADEG NDSLDTLIRQ AIGKEPLFSF SRTGDGPVQW FQLLHGLEQQ  60
DNAGGWPMLT PLKLQKCEKC SREFYAPINY RRHMRLHRRA LNFDKESRKY RDLLGAFWDK  120
LSVDEIKEVV SLHDVSIKVS TRFTLPVHDV SIKDLAGSSL VNDLATSLQK MAIWAHPQDY  180
YEAGLALLEV IQGKPSKLPI TSQELFSILD DASETTFLCA GTAESVQKYV FDGYAAKKGL  240
EFKNLVACAS FLFEQKLVKA WFADKDAEAM RCQKLLFEEE EAAQKRRAEL LERKKLKKLR  300
QKEQRAREQS NWERGDLEVP ADSFEGPIAE SSVRSAAASE SSSSTPQVSD DIYSCLELVQ  360
FSNNENMDIE AQLNISHPHL DLVEIQDVEP PPVSANSRRH FPHTQWQVAK SQRTGRNGFR  420
NNQNHEVQNL EPIQKHGVIK DRGAPVNGSK IWTRKIRVQN GERLRLDPQK EAIDQNQRNC  480
EVMIGSISVS MKNCSTHGQG NCPAVERDNF ESIEPAMLQK LNHVQKPAKH DVLQGGSNGA  540
AVKLWRPVSR HGSGRQDPGE DVISVKLDNR TSSTENNLRL CSRDNPTGKT KNYTCQVSDG  600
NVLQGLGFCS VSAKAFLSQR WKEAISGDHV RLVLSDDIEV SGQSDTQNGS SEAAPRSADQ  660
DHGILVKADN QQANTGDLSF SSNGNSAHRI FALFGSLHWL LIFFYPPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291298ERKKLKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016505845.10.0PREDICTED: uncharacterized protein LOC107823668 isoform X2
TrEMBLM1BAI60.0M1BAI6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000408430.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-108C2H2-like zinc finger protein